99.99 33232207 33232207 U 0 unclassified 0.01 4283 0 R 1 root 0.01 4283 0 R1 131567 cellular organisms 0.01 4283 104 D 2759 Eukaryota 0.01 4179 776 K 33090 Viridiplantae 0.01 3399 0 P 35493 Streptophyta 0.01 3399 0 P1 131221 Streptophytina 0.01 3399 806 P2 3193 Embryophyta 0.01 2593 0 P3 58023 Tracheophyta 0.01 2593 0 P4 78536 Euphyllophyta 0.01 2593 0 P5 58024 Spermatophyta 0.01 2593 160 C 3398 Magnoliopsida 0.01 2432 1254 C1 1437183 Mesangiospermae 0.00 952 0 C2 4447 Liliopsida 0.00 952 3 C3 1437197 Petrosaviidae 0.00 946 9 C4 4734 commelinids 0.00 930 3 O 38820 Poales 0.00 925 80 F 4479 Poaceae 0.00 842 13 F1 359160 BOP clade 0.00 829 388 F2 147368 Pooideae 0.00 415 0 F3 1648037 Poodae 0.00 415 0 F4 147387 Poeae 0.00 415 0 F5 1652081 Poeae Chloroplast Group 2 (Poeae type) 0.00 415 0 F6 2948571 Loliodinae 0.00 415 0 F7 640630 Loliinae 0.00 415 407 G 4520 Lolium 0.00 6 6 S 4522 Lolium perenne 0.00 2 2 S 89674 Lolium rigidum 0.00 26 0 F3 1648038 Triticodae 0.00 26 17 F4 147389 Triticeae 0.00 5 2 F5 1648030 Triticinae 0.00 3 1 G 4564 Triticum 0.00 2 2 S 4565 Triticum aestivum 0.00 4 0 F5 1648017 Hordeinae 0.00 4 0 G 4512 Hordeum 0.00 4 0 S 4513 Hordeum vulgare 0.00 4 4 S1 112509 Hordeum vulgare subsp. vulgare 0.00 3 0 F1 147370 PACMAD clade 0.00 3 2 F2 147369 Panicoideae 0.00 1 0 F3 1648036 Panicodae 0.00 1 0 F4 147428 Paniceae 0.00 1 0 F5 1293365 Panicinae 0.00 1 0 G 4539 Panicum 0.00 1 0 G1 2100771 Panicum sect. Hiantes 0.00 1 1 S 38727 Panicum virgatum 0.00 2 0 F 4613 Bromeliaceae 0.00 2 0 F1 1909378 Bromelioideae 0.00 2 0 G 4614 Ananas 0.00 2 2 S 4615 Ananas comosus 0.00 5 0 O 4618 Zingiberales 0.00 5 0 F 4642 Zingiberaceae 0.00 5 0 G 4650 Zingiber 0.00 5 5 S 94328 Zingiber officinale 0.00 2 0 O 40551 Arecales 0.00 2 0 F 4710 Arecaceae 0.00 2 0 F1 169700 Coryphoideae 0.00 2 0 F2 169748 Phoeniceae 0.00 2 0 G 4719 Phoenix 0.00 2 2 S 42345 Phoenix dactylifera 0.00 2 0 O 73496 Asparagales 0.00 2 0 F 40552 Asparagaceae 0.00 2 0 F1 703533 Asparagoideae 0.00 2 0 G 4685 Asparagus 0.00 2 2 S 4686 Asparagus officinalis 0.00 1 0 O 40548 Dioscoreales 0.00 1 0 F 4671 Dioscoreaceae 0.00 1 0 G 4672 Dioscorea 0.00 1 0 S 29710 Dioscorea cayenensis 0.00 1 1 S1 55577 Dioscorea cayenensis subsp. rotundata 0.00 215 0 C2 71240 eudicotyledons 0.00 215 0 C3 91827 Gunneridae 0.00 215 67 C4 1437201 Pentapetalae 0.00 105 38 C5 71275 rosids 0.00 50 9 C6 91835 fabids 0.00 35 0 O 72025 Fabales 0.00 35 0 F 3803 Fabaceae 0.00 35 0 F1 3814 Papilionoideae 0.00 35 0 F2 2231393 50 kb inversion clade 0.00 34 4 F3 2231382 NPAAA clade 0.00 29 0 F4 2233855 indigoferoid/millettioid clade 0.00 29 0 F5 163735 Phaseoleae 0.00 29 0 G 3913 Vigna 0.00 25 0 S 157791 Vigna radiata 0.00 25 25 S1 3916 Vigna radiata var. radiata 0.00 4 4 S 3917 Vigna unguiculata 0.00 1 0 F4 2233838 Hologalegina 0.00 1 0 F5 2233839 IRL clade 0.00 1 0 F6 163742 Trifolieae 0.00 1 0 G 3898 Trifolium 0.00 1 1 S 57577 Trifolium pratense 0.00 1 0 F3 2231387 dalbergioids sensu lato 0.00 1 0 F4 163725 Dalbergieae 0.00 1 0 F5 2231390 Pterocarpus clade 0.00 1 1 G 3817 Arachis 0.00 3 0 O 3646 Malpighiales 0.00 2 0 F 3977 Euphorbiaceae 0.00 2 0 F1 235629 Acalyphoideae 0.00 2 0 F2 235880 Acalypheae 0.00 2 0 G 3987 Ricinus 0.00 2 2 S 3988 Ricinus communis 0.00 1 0 F 3688 Salicaceae 0.00 1 0 F1 238069 Saliceae 0.00 1 0 G 3689 Populus 0.00 1 1 S 3694 Populus trichocarpa 0.00 2 0 O 71239 Cucurbitales 0.00 2 0 F 3650 Cucurbitaceae 0.00 2 0 F1 1003877 Benincaseae 0.00 1 0 G 3655 Cucumis 0.00 1 1 S 3659 Cucumis sativus 0.00 1 0 G 102210 Benincasa 0.00 1 1 S 102211 Benincasa hispida 0.00 1 0 O 3502 Fagales 0.00 1 0 F 3503 Fagaceae 0.00 1 1 G 3511 Quercus 0.00 13 0 C6 91836 malvids 0.00 10 0 O 3699 Brassicales 0.00 10 0 F 3700 Brassicaceae 0.00 6 0 F1 980083 Camelineae 0.00 6 0 G 71323 Camelina 0.00 6 6 S 90675 Camelina sativa 0.00 4 0 F1 981071 Brassiceae 0.00 3 0 G 3725 Raphanus 0.00 3 3 S 3726 Raphanus sativus 0.00 1 0 G 3705 Brassica 0.00 1 0 S 3712 Brassica oleracea 0.00 1 1 S1 109376 Brassica oleracea var. oleracea 0.00 2 0 O 41938 Malvales 0.00 2 0 F 3629 Malvaceae 0.00 2 0 F1 214907 Malvoideae 0.00 2 1 G 3633 Gossypium 0.00 1 1 S 29730 Gossypium raimondii 0.00 1 0 O 41937 Sapindales 0.00 1 0 F 4011 Anacardiaceae 0.00 1 0 G 23461 Mangifera 0.00 1 1 S 29780 Mangifera indica 0.00 4 0 C6 91834 rosids incertae sedis 0.00 4 0 O 403667 Vitales 0.00 4 0 F 3602 Vitaceae 0.00 4 0 F1 2304100 Viteae 0.00 4 1 G 3603 Vitis 0.00 2 2 S 29760 Vitis vinifera 0.00 1 1 S 96939 Vitis riparia 0.00 40 2 C5 71274 asterids 0.00 23 0 C6 91882 campanulids 0.00 21 0 O 4209 Asterales 0.00 21 8 F 4210 Asteraceae 0.00 9 0 F1 219120 Cichorioideae 0.00 9 0 F2 219121 Cichorieae 0.00 9 0 F3 745062 Lactucinae 0.00 9 0 G 4235 Lactuca 0.00 9 9 S 4236 Lactuca sativa 0.00 4 0 F1 102804 Asteroideae 0.00 2 0 F2 102809 Astereae 0.00 2 0 F3 877976 North American clade 0.00 2 0 F4 2841728 Conyzinae 0.00 2 0 G 41574 Erigeron 0.00 2 2 S 72917 Erigeron canadensis 0.00 2 0 F2 911341 Heliantheae alliance 0.00 2 0 F3 102814 Heliantheae 0.00 2 0 G 4231 Helianthus 0.00 2 2 S 4232 Helianthus annuus 0.00 2 0 O 4036 Apiales 0.00 2 0 O1 364270 Apiineae 0.00 2 0 F 4037 Apiaceae 0.00 2 0 F1 241778 Apioideae 0.00 2 0 F2 241789 Scandiceae 0.00 2 0 F3 241799 Daucinae 0.00 2 0 G 4038 Daucus 0.00 2 0 G1 1873447 Daucus sect. Daucus 0.00 2 0 S 4039 Daucus carota 0.00 2 2 S1 79200 Daucus carota subsp. sativus 0.00 13 0 C6 91888 lamiids 0.00 8 6 O 4143 Lamiales 0.00 1 0 F 4136 Lamiaceae 0.00 1 0 F1 216706 Nepetoideae 0.00 1 0 F2 216718 Mentheae 0.00 1 0 F3 2836339 Salviinae 0.00 1 0 G 21880 Salvia 0.00 1 0 G1 2026555 Salvia subgen. Calosphace 0.00 1 0 G2 2026556 core Calosphace 0.00 1 1 S 180675 Salvia splendens 0.00 1 0 F 4144 Oleaceae 0.00 1 0 F1 426106 Oleeae 0.00 1 0 G 4145 Olea 0.00 1 0 S 4146 Olea europaea 0.00 1 0 S1 158383 Olea europaea subsp. europaea 0.00 1 1 S2 158386 Olea europaea var. sylvestris 0.00 3 1 O 4069 Solanales 0.00 1 0 F 4070 Solanaceae 0.00 1 0 F1 424551 Solanoideae 0.00 1 0 F2 424574 Solaneae 0.00 1 0 G 4107 Solanum 0.00 1 0 G1 49274 Solanum subgen. Lycopersicon 0.00 1 1 S 4081 Solanum lycopersicum 0.00 1 0 F 4118 Convolvulaceae 0.00 1 0 F1 267213 Ipomoeeae 0.00 1 0 G 4119 Ipomoea 0.00 1 1 S 35885 Ipomoea triloba 0.00 2 0 O 4055 Gentianales 0.00 2 0 F 24966 Rubiaceae 0.00 2 0 F1 169618 Ixoroideae 0.00 2 0 F2 1968429 Gardenieae complex 0.00 2 0 F3 1968428 Bertiereae - Coffeeae clade 0.00 2 0 F4 169640 Coffeeae 0.00 2 1 G 13442 Coffea 0.00 1 1 S 49369 Coffea eugenioides 0.00 2 0 O 41945 Ericales 0.00 1 0 F 4345 Ericaceae 0.00 1 0 F1 217035 Ericoideae 0.00 1 0 F2 217046 Rhodoreae 0.00 1 0 G 4346 Rhododendron 0.00 1 1 S 182163 Rhododendron vialii 0.00 1 0 F 25692 Balsaminaceae 0.00 1 0 G 35939 Impatiens 0.00 1 1 S 253017 Impatiens glandulifera 0.00 3 0 O 3524 Caryophyllales 0.00 3 0 F 1804623 Chenopodiaceae 0.00 3 0 F1 1804621 Betoideae 0.00 3 0 G 3554 Beta 0.00 3 0 S 161934 Beta vulgaris 0.00 3 3 S1 3555 Beta vulgaris subsp. vulgaris 0.00 8 0 O 232378 Proteales 0.00 8 0 F 4328 Proteaceae 0.00 4 0 G 4329 Macadamia 0.00 4 4 S 60698 Macadamia integrifolia 0.00 4 0 G 54954 Telopea 0.00 4 4 S 54955 Telopea speciosissima 0.00 3 0 C2 232347 Magnoliidae 0.00 3 0 O 3400 Magnoliales 0.00 3 0 F 3401 Magnoliaceae 0.00 3 0 G 3402 Magnolia 0.00 3 3 S 86752 Magnolia sinica 0.00 1 0 O 261007 Nymphaeales 0.00 1 0 F 4410 Nymphaeaceae 0.00 1 0 G 4418 Nymphaea 0.00 1 1 S 210225 Nymphaea colorata 0.00 4 2 P 3041 Chlorophyta 0.00 1 0 C 1035538 Mamiellophyceae 0.00 1 1 O 13792 Mamiellales 0.00 1 0 P1 2692248 core chlorophytes 0.00 1 0 C 3166 Chlorophyceae 0.00 1 0 C1 2812636 CS clade 0.00 1 0 O 3042 Chlamydomonadales 0.00 1 0 F 3051 Chlamydomonadaceae 0.00 1 0 G 3052 Chlamydomonas 0.00 1 1 S 3055 Chlamydomonas reinhardtii