99.58 39210183 39210183 U 0 unclassified 0.42 163985 0 R 1 root 0.42 163985 0 R1 131567 cellular organisms 0.42 163985 1127 D 2759 Eukaryota 0.41 162858 2021 K 33090 Viridiplantae 0.41 160667 0 P 35493 Streptophyta 0.41 160667 0 P1 131221 Streptophytina 0.41 160667 2653 P2 3193 Embryophyta 0.40 157759 0 P3 58023 Tracheophyta 0.40 157759 0 P4 78536 Euphyllophyta 0.40 157759 0 P5 58024 Spermatophyta 0.40 157759 1793 C 3398 Magnoliopsida 0.40 155927 92706 C1 1437183 Mesangiospermae 0.12 47286 0 C2 71240 eudicotyledons 0.12 47286 0 C3 91827 Gunneridae 0.12 47286 24091 C4 1437201 Pentapetalae 0.04 15683 4757 C5 71275 rosids 0.02 8580 4296 C6 91835 fabids 0.01 2436 0 O 72025 Fabales 0.01 2436 0 F 3803 Fabaceae 0.01 2436 0 F1 3814 Papilionoideae 0.01 2436 652 F2 2231393 50 kb inversion clade 0.00 1279 359 F3 2231382 NPAAA clade 0.00 574 0 F4 2233855 indigoferoid/millettioid clade 0.00 574 139 F5 163735 Phaseoleae 0.00 200 32 G 3913 Vigna 0.00 96 0 S 157791 Vigna radiata 0.00 96 96 S1 3916 Vigna radiata var. radiata 0.00 44 44 S 3917 Vigna unguiculata 0.00 28 28 S 3914 Vigna angularis 0.00 126 0 G 3820 Cajanus 0.00 126 126 S 3821 Cajanus cajan 0.00 84 0 G 3846 Glycine 0.00 84 58 G1 1462606 Glycine subgen. Soja 0.00 16 16 S 3848 Glycine soja 0.00 10 10 S 3847 Glycine max 0.00 25 0 G 3883 Phaseolus 0.00 25 25 S 3885 Phaseolus vulgaris 0.00 346 18 F4 2233838 Hologalegina 0.00 299 65 F5 2233839 IRL clade 0.00 96 0 F6 163743 Fabeae 0.00 96 0 G 3887 Pisum 0.00 96 96 S 3888 Pisum sativum 0.00 87 8 F6 163742 Trifolieae 0.00 60 0 G 3877 Medicago 0.00 60 60 S 3880 Medicago truncatula 0.00 19 0 G 3898 Trifolium 0.00 19 19 S 57577 Trifolium pratense 0.00 51 0 F6 163722 Cicereae 0.00 51 0 G 3826 Cicer 0.00 51 51 S 3827 Cicer arietinum 0.00 29 0 F5 2233857 robinioid clade 0.00 29 0 F6 163747 Loteae 0.00 29 0 G 3867 Lotus 0.00 29 29 S 34305 Lotus japonicus 0.00 441 0 F3 2231387 dalbergioids sensu lato 0.00 441 0 F4 163725 Dalbergieae 0.00 441 0 F5 2231390 Pterocarpus clade 0.00 441 151 G 3817 Arachis 0.00 228 228 S 130453 Arachis duranensis 0.00 28 28 S 217475 Arachis stenosperma 0.00 24 24 S 3818 Arachis hypogaea 0.00 10 10 S 130454 Arachis ipaensis 0.00 64 0 F3 2231384 genistoids sensu lato 0.00 64 0 F4 2231385 core genistoids 0.00 64 0 F5 163729 Genisteae 0.00 64 0 G 3869 Lupinus 0.00 64 64 S 3871 Lupinus angustifolius 0.00 626 19 O 3646 Malpighiales 0.00 581 16 F 3977 Euphorbiaceae 0.00 502 12 F1 235631 Crotonoideae 0.00 457 0 F2 235882 Micrandreae 0.00 457 0 G 3980 Hevea 0.00 457 457 S 3981 Hevea brasiliensis 0.00 33 0 F2 235883 Manihoteae 0.00 33 0 G 3982 Manihot 0.00 33 33 S 3983 Manihot esculenta 0.00 63 0 F1 235629 Acalyphoideae 0.00 63 5 F2 235880 Acalypheae 0.00 37 0 G 3987 Ricinus 0.00 37 37 S 3988 Ricinus communis 0.00 21 0 G 3984 Mercurialis 0.00 21 21 S 3986 Mercurialis annua 0.00 26 0 F 3688 Salicaceae 0.00 26 0 F1 238069 Saliceae 0.00 26 0 G 3689 Populus 0.00 26 26 S 3694 Populus trichocarpa 0.00 506 48 O 3744 Rosales 0.00 368 20 F 3745 Rosaceae 0.00 269 35 F1 171637 Amygdaloideae 0.00 194 0 F2 721813 Maleae 0.00 194 64 G 3749 Malus 0.00 115 115 S 3750 Malus domestica 0.00 15 15 S 3752 Malus sylvestris 0.00 40 0 F2 721805 Amygdaleae 0.00 40 10 G 3754 Prunus 0.00 17 17 S 102107 Prunus mume 0.00 8 8 S 3760 Prunus persica 0.00 5 5 S 3755 Prunus dulcis 0.00 79 5 F1 171638 Rosoideae 0.00 57 0 F2 721789 Potentilleae 0.00 40 0 F3 1184124 Fragariinae 0.00 40 0 G 3746 Fragaria 0.00 40 0 S 57918 Fragaria vesca 0.00 40 40 S1 101020 Fragaria vesca subsp. vesca 0.00 17 0 F3 1184125 Potentilleae incertae sedis 0.00 17 0 G 23204 Potentilla 0.00 17 17 S 57926 Potentilla anserina 0.00 17 0 F2 1176516 Rosoideae incertae sedis 0.00 17 0 G 3764 Rosa 0.00 17 17 S 74649 Rosa chinensis 0.00 46 0 F 3481 Cannabaceae 0.00 46 0 G 3482 Cannabis 0.00 46 46 S 3483 Cannabis sativa 0.00 44 0 F 3608 Rhamnaceae 0.00 44 0 F1 325284 Paliureae 0.00 44 0 G 72171 Ziziphus 0.00 44 0 S 326968 Ziziphus jujuba 0.00 44 44 S1 714518 Ziziphus jujuba var. spinosa 0.00 422 42 O 3502 Fagales 0.00 279 23 F 16714 Juglandaceae 0.00 224 23 G 16718 Juglans 0.00 184 184 S 51240 Juglans regia 0.00 17 17 S 2249226 Juglans microcarpa x Juglans regia 0.00 32 0 G 13402 Carya 0.00 32 32 S 32201 Carya illinoinensis 0.00 101 0 F 3503 Fagaceae 0.00 101 53 G 3511 Quercus 0.00 27 27 S 97700 Quercus lobata 0.00 21 21 S 38942 Quercus robur 0.00 278 0 O 71239 Cucurbitales 0.00 278 19 F 3650 Cucurbitaceae 0.00 143 13 F1 1003877 Benincaseae 0.00 83 0 G 102210 Benincasa 0.00 83 83 S 102211 Benincasa hispida 0.00 47 6 G 3655 Cucumis 0.00 30 30 S 3656 Cucumis melo 0.00 11 11 S 3659 Cucumis sativus 0.00 116 0 F1 1003878 Cucurbiteae 0.00 116 0 G 3660 Cucurbita 0.00 116 0 S 3663 Cucurbita pepo 0.00 116 116 S1 3664 Cucurbita pepo subsp. pepo 0.00 16 0 O 233875 Celastrales 0.00 16 0 F 4305 Celastraceae 0.00 16 0 G 123484 Tripterygium 0.00 16 16 S 458696 Tripterygium wilfordii 0.01 2294 302 C6 91836 malvids 0.00 1158 0 O 3699 Brassicales 0.00 1158 52 F 3700 Brassicaceae 0.00 848 17 F1 981071 Brassiceae 0.00 802 57 G 3705 Brassica 0.00 728 0 S 3712 Brassica oleracea 0.00 728 728 S1 109376 Brassica oleracea var. oleracea 0.00 13 13 S 3708 Brassica napus 0.00 4 4 S 3711 Brassica rapa 0.00 29 0 G 3725 Raphanus 0.00 29 29 S 3726 Raphanus sativus 0.00 258 14 F1 980083 Camelineae 0.00 230 0 G 71323 Camelina 0.00 230 230 S 90675 Camelina sativa 0.00 14 0 G 3701 Arabidopsis 0.00 14 14 S 3702 Arabidopsis thaliana 0.00 613 0 O 41938 Malvales 0.00 613 14 F 3629 Malvaceae 0.00 554 0 F1 214907 Malvoideae 0.00 554 174 G 3633 Gossypium 0.00 308 308 S 29730 Gossypium raimondii 0.00 57 57 S 3635 Gossypium hirsutum 0.00 15 15 S 29729 Gossypium arboreum 0.00 45 0 F1 214909 Byttnerioideae 0.00 45 0 G 3640 Theobroma 0.00 45 45 S 3641 Theobroma cacao 0.00 127 8 O 41944 Myrtales 0.00 92 0 F 3931 Myrtaceae 0.00 92 0 F1 1699513 Myrtoideae 0.00 71 0 F2 1699524 Eucalypteae 0.00 71 0 G 3932 Eucalyptus 0.00 71 71 S 71139 Eucalyptus grandis 0.00 21 0 F2 1699523 Myrteae 0.00 21 0 F3 1705102 Australasian group 0.00 21 0 G 178132 Rhodamnia 0.00 21 21 S 178133 Rhodamnia argentea 0.00 27 0 F 3928 Lythraceae 0.00 27 0 G 22662 Punica 0.00 27 27 S 22663 Punica granatum 0.00 94 1 O 41937 Sapindales 0.00 62 0 F 23513 Rutaceae 0.00 62 0 F1 1728959 Aurantioideae 0.00 62 0 G 2706 Citrus 0.00 62 62 S 2711 Citrus sinensis 0.00 31 0 F 4011 Anacardiaceae 0.00 31 0 G 23461 Mangifera 0.00 31 31 S 29780 Mangifera indica 0.00 52 0 C6 91834 rosids incertae sedis 0.00 52 0 O 403667 Vitales 0.00 52 0 F 3602 Vitaceae 0.00 52 0 F1 2304100 Viteae 0.00 52 25 G 3603 Vitis 0.00 17 17 S 29760 Vitis vinifera 0.00 10 10 S 96939 Vitis riparia 0.02 7088 2535 C5 71274 asterids 0.01 2994 824 C6 91888 lamiids 0.00 1508 168 O 4069 Solanales 0.00 1227 154 F 4070 Solanaceae 0.00 719 126 F1 424551 Solanoideae 0.00 356 0 F2 424574 Solaneae 0.00 356 85 G 4107 Solanum 0.00 169 38 G1 49274 Solanum subgen. Lycopersicon 0.00 73 73 S 28526 Solanum pennellii 0.00 58 58 S 4081 Solanum lycopersicum 0.00 53 53 S 45834 Solanum dulcamara 0.00 49 49 S 172797 Solanum stenotomum 0.00 237 0 F2 424564 Capsiceae 0.00 237 0 G 4071 Capsicum 0.00 237 237 S 4072 Capsicum annuum 0.00 354 0 F1 424554 Nicotianoideae 0.00 354 0 F2 424562 Nicotianeae 0.00 354 0 G 4085 Nicotiana 0.00 354 354 S 49451 Nicotiana attenuata 0.00 113 0 F 4118 Convolvulaceae 0.00 113 0 F1 267213 Ipomoeeae 0.00 113 0 G 4119 Ipomoea 0.00 113 113 S 35885 Ipomoea triloba 0.00 597 47 O 4143 Lamiales 0.00 419 0 F 4144 Oleaceae 0.00 419 0 F1 426106 Oleeae 0.00 419 0 G 4145 Olea 0.00 419 0 S 4146 Olea europaea 0.00 419 0 S1 158383 Olea europaea subsp. europaea 0.00 419 419 S2 158386 Olea europaea var. sylvestris 0.00 98 0 F 4136 Lamiaceae 0.00 98 0 F1 216706 Nepetoideae 0.00 98 0 F2 216718 Mentheae 0.00 98 0 F3 2836339 Salviinae 0.00 98 16 G 21880 Salvia 0.00 48 0 G1 2026555 Salvia subgen. Calosphace 0.00 48 0 G2 2026556 core Calosphace 0.00 48 48 S 180675 Salvia splendens 0.00 34 1 G1 2291027 Salvia incertae sedis 0.00 19 19 S 226208 Salvia miltiorrhiza 0.00 14 14 S 49212 Salvia hispanica 0.00 33 0 F 4180 Pedaliaceae 0.00 33 0 G 4181 Sesamum 0.00 33 33 S 4182 Sesamum indicum 0.00 65 0 O 4055 Gentianales 0.00 65 0 F 24966 Rubiaceae 0.00 65 0 F1 169618 Ixoroideae 0.00 65 0 F2 1968429 Gardenieae complex 0.00 65 0 F3 1968428 Bertiereae - Coffeeae clade 0.00 65 0 F4 169640 Coffeeae 0.00 65 30 G 13442 Coffea 0.00 19 19 S 13443 Coffea arabica 0.00 16 16 S 49369 Coffea eugenioides 0.00 1249 48 C6 91882 campanulids 0.00 642 0 O 4209 Asterales 0.00 642 188 F 4210 Asteraceae 0.00 183 19 F1 102804 Asteroideae 0.00 115 0 F2 911341 Heliantheae alliance 0.00 115 0 F3 102814 Heliantheae 0.00 115 0 G 4231 Helianthus 0.00 115 115 S 4232 Helianthus annuus 0.00 49 0 F2 102809 Astereae 0.00 49 0 F3 877976 North American clade 0.00 49 0 F4 2841728 Conyzinae 0.00 49 0 G 41574 Erigeron 0.00 49 49 S 72917 Erigeron canadensis 0.00 160 0 F1 219103 Carduoideae 0.00 160 0 F2 102818 Cardueae 0.00 160 0 F3 742010 Carduinae 0.00 160 0 G 4264 Cynara 0.00 160 0 S 4265 Cynara cardunculus 0.00 160 0 S1 309979 Cynara cardunculus subsp. cardunculus 0.00 160 160 S2 59895 Cynara cardunculus var. scolymus 0.00 111 0 F1 219120 Cichorioideae 0.00 111 0 F2 219121 Cichorieae 0.00 111 0 F3 745062 Lactucinae 0.00 111 0 G 4235 Lactuca 0.00 111 111 S 4236 Lactuca sativa 0.00 559 0 O 4036 Apiales 0.00 559 0 O1 364270 Apiineae 0.00 559 0 F 4037 Apiaceae 0.00 559 0 F1 241778 Apioideae 0.00 559 0 F2 241789 Scandiceae 0.00 559 0 F3 241799 Daucinae 0.00 559 0 G 4038 Daucus 0.00 559 0 G1 1873447 Daucus sect. Daucus 0.00 559 0 S 4039 Daucus carota 0.00 559 559 S1 79200 Daucus carota subsp. sativus 0.00 310 77 O 41945 Ericales 0.00 76 0 F 4345 Ericaceae 0.00 76 0 F1 217035 Ericoideae 0.00 76 0 F2 217046 Rhodoreae 0.00 76 0 G 4346 Rhododendron 0.00 76 76 S 182163 Rhododendron vialii 0.00 60 0 F 25692 Balsaminaceae 0.00 60 0 G 35939 Impatiens 0.00 60 60 S 253017 Impatiens glandulifera 0.00 58 0 F 19955 Ebenaceae 0.00 58 0 G 13492 Diospyros 0.00 58 58 S 55363 Diospyros lotus 0.00 39 0 F 3623 Actinidiaceae 0.00 39 0 G 3624 Actinidia 0.00 39 39 S 165200 Actinidia eriantha 0.00 334 12 O 3524 Caryophyllales 0.00 288 64 F 1804623 Chenopodiaceae 0.00 192 0 F1 1804621 Betoideae 0.00 192 0 G 3554 Beta 0.00 192 0 S 161934 Beta vulgaris 0.00 192 192 S1 3555 Beta vulgaris subsp. vulgaris 0.00 32 0 F1 1307796 Chenopodioideae 0.00 32 0 F2 1307775 Anserineae 0.00 32 0 G 3561 Spinacia 0.00 32 32 S 3562 Spinacia oleracea 0.00 34 0 F 3563 Amaranthaceae 0.00 34 0 G 3564 Amaranthus 0.00 34 34 S 29722 Amaranthus tricolor 0.00 90 0 O 41947 Santalales 0.00 90 0 F 1003242 Ximeniaceae 0.00 90 0 G 397391 Malania 0.00 90 90 S 397392 Malania oleifera 0.04 14028 0 C2 4447 Liliopsida 0.04 14028 874 C3 1437197 Petrosaviidae 0.03 12864 1367 C4 4734 commelinids 0.03 9893 172 O 38820 Poales 0.02 9569 5683 F 4479 Poaceae 0.01 3177 203 F1 359160 BOP clade 0.01 2898 178 F2 147368 Pooideae 0.01 2419 0 F3 1648038 Triticodae 0.01 2419 159 F4 147389 Triticeae 0.01 2092 401 F5 1648030 Triticinae 0.00 1543 881 G 4564 Triticum 0.00 379 379 S 85692 Triticum dicoccoides 0.00 245 245 S 4565 Triticum aestivum 0.00 38 38 S 4572 Triticum urartu 0.00 148 0 G 4480 Aegilops 0.00 148 0 S 37682 Aegilops tauschii 0.00 148 148 S1 200361 Aegilops tauschii subsp. strangulata 0.00 168 0 F5 1648017 Hordeinae 0.00 168 0 G 4512 Hordeum 0.00 168 0 S 4513 Hordeum vulgare 0.00 168 168 S1 112509 Hordeum vulgare subsp. vulgare 0.00 294 0 F3 1648037 Poodae 0.00 294 0 F4 147387 Poeae 0.00 294 0 F5 1652081 Poeae Chloroplast Group 2 (Poeae type) 0.00 294 0 F6 2948571 Loliodinae 0.00 294 0 F7 640630 Loliinae 0.00 294 53 G 4520 Lolium 0.00 205 205 S 4522 Lolium perenne 0.00 36 36 S 89674 Lolium rigidum 0.00 7 0 F3 2822797 Stipodae 0.00 7 0 F4 147385 Brachypodieae 0.00 7 0 G 15367 Brachypodium 0.00 7 7 S 15368 Brachypodium distachyon 0.00 76 0 F2 147367 Oryzoideae 0.00 76 0 F3 147380 Oryzeae 0.00 76 0 F4 1648021 Oryzinae 0.00 76 20 G 4527 Oryza 0.00 26 0 S 4530 Oryza sativa 0.00 26 26 S1 39947 Oryza sativa Japonica Group 0.00 15 15 S 4533 Oryza brachyantha 0.00 15 15 S 4538 Oryza glaberrima 0.00 709 0 F1 147370 PACMAD clade 0.00 709 32 F2 147369 Panicoideae 0.00 593 0 F3 1648036 Panicodae 0.00 593 6 F4 147428 Paniceae 0.00 546 0 F5 1293365 Panicinae 0.00 546 17 G 4539 Panicum 0.00 472 0 G1 2100772 Panicum sect. Panicum 0.00 472 472 S 206008 Panicum hallii 0.00 57 0 G1 2100771 Panicum sect. Hiantes 0.00 57 57 S 38727 Panicum virgatum 0.00 41 0 F5 1293361 Cenchrinae 0.00 41 15 G 4554 Setaria 0.00 23 23 S 4555 Setaria italica 0.00 3 3 S 4556 Setaria viridis 0.00 84 0 F3 1648033 Andropogonodae 0.00 84 3 F4 147429 Andropogoneae 0.00 49 0 F5 1648029 Tripsacinae 0.00 49 0 G 4575 Zea 0.00 49 49 S 4577 Zea mays 0.00 32 0 F5 1648028 Sorghinae 0.00 32 0 G 4557 Sorghum 0.00 32 32 S 4558 Sorghum bicolor 0.00 152 0 F 4613 Bromeliaceae 0.00 152 0 F1 1909378 Bromelioideae 0.00 152 0 G 4614 Ananas 0.00 152 152 S 4615 Ananas comosus 0.00 1438 0 O 40551 Arecales 0.00 1438 22 F 4710 Arecaceae 0.00 1382 0 F1 169697 Arecoideae 0.00 1382 0 F2 169705 Cocoseae 0.00 1382 0 F3 169729 Elaeidinae 0.00 1382 0 G 51952 Elaeis 0.00 1382 1382 S 51953 Elaeis guineensis 0.00 34 0 F1 169700 Coryphoideae 0.00 34 0 F2 169748 Phoeniceae 0.00 34 0 G 4719 Phoenix 0.00 34 34 S 42345 Phoenix dactylifera 0.00 166 18 O 4618 Zingiberales 0.00 111 0 F 4642 Zingiberaceae 0.00 111 0 G 4650 Zingiber 0.00 111 111 S 94328 Zingiber officinale 0.00 37 0 F 4637 Musaceae 0.00 37 0 G 4640 Musa 0.00 37 0 S 4641 Musa acuminata 0.00 37 37 S1 214687 Musa acuminata subsp. malaccensis 0.00 243 0 O 73496 Asparagales 0.00 243 0 F 40552 Asparagaceae 0.00 243 0 F1 703533 Asparagoideae 0.00 243 0 G 4685 Asparagus 0.00 243 243 S 4686 Asparagus officinalis 0.00 47 0 O 40548 Dioscoreales 0.00 47 0 F 4671 Dioscoreaceae 0.00 47 0 G 4672 Dioscorea 0.00 47 0 S 29710 Dioscorea cayenensis 0.00 47 47 S1 55577 Dioscorea cayenensis subsp. rotundata 0.00 850 0 O 232378 Proteales 0.00 850 10 F 4328 Proteaceae 0.00 539 0 G 4329 Macadamia 0.00 539 539 S 60698 Macadamia integrifolia 0.00 301 0 G 54954 Telopea 0.00 301 301 S 54955 Telopea speciosissima 0.00 549 0 C2 232347 Magnoliidae 0.00 549 0 O 3400 Magnoliales 0.00 549 0 F 3401 Magnoliaceae 0.00 549 0 G 3402 Magnolia 0.00 549 549 S 86752 Magnolia sinica 0.00 508 0 O 41768 Ranunculales 0.00 508 0 F 3465 Papaveraceae 0.00 508 0 F1 1462614 Papaveroideae 0.00 508 0 G 3468 Papaver 0.00 508 508 S 3469 Papaver somniferum 0.00 39 0 O 261007 Nymphaeales 0.00 39 0 F 4410 Nymphaeaceae 0.00 39 0 G 4418 Nymphaea 0.00 39 39 S 210225 Nymphaea colorata 0.00 255 0 P3 3208 Bryophyta 0.00 255 0 P4 404260 Bryophytina 0.00 255 0 C 3214 Bryopsida 0.00 255 0 C1 114656 Funariidae 0.00 255 0 O 3215 Funariales 0.00 255 0 F 3216 Funariaceae 0.00 255 0 G 37414 Physcomitrium 0.00 255 255 S 3218 Physcomitrium patens 0.00 170 7 P 3041 Chlorophyta 0.00 84 0 P1 2692248 core chlorophytes 0.00 84 0 C 3166 Chlorophyceae 0.00 84 0 C1 2812636 CS clade 0.00 84 0 O 3042 Chlamydomonadales 0.00 84 0 F 3051 Chlamydomonadaceae 0.00 84 0 G 3052 Chlamydomonas 0.00 84 84 S 3055 Chlamydomonas reinhardtii 0.00 79 0 C 1035538 Mamiellophyceae 0.00 79 46 O 13792 Mamiellales 0.00 24 0 F 41873 Mamiellaceae 0.00 24 0 G 38832 Micromonas 0.00 24 24 S 296587 Micromonas commoda 0.00 9 0 F 1525212 Bathycoccaceae 0.00 7 0 G 41874 Bathycoccus 0.00 7 7 S 41875 Bathycoccus prasinos 0.00 2 0 G 70447 Ostreococcus 0.00 2 2 S 70448 Ostreococcus tauri 0.00 0 0 G1 2268852 unclassified Ostreococcus 0.00 0 0 S 242159 Ostreococcus sp. 'lucimarinus' 0.00 0 0 S1 436017 Ostreococcus lucimarinus CCE9901 0.00 0 0 P 2763 Rhodophyta 0.00 0 0 C 2797 Bangiophyceae 0.00 0 0 O 265318 Cyanidiales 0.00 0 0 F 265316 Cyanidiaceae 0.00 0 0 G 45156 Cyanidioschyzon 0.00 0 0 S 45157 Cyanidioschyzon merolae 0.00 0 0 S1 280699 Cyanidioschyzon merolae strain 10D