99.54 39607069 39607069 U 0 unclassified 0.46 183990 0 R 1 root 0.46 183990 0 R1 131567 cellular organisms 0.46 183990 1002 D 2759 Eukaryota 0.46 182987 1849 K 33090 Viridiplantae 0.45 180968 0 P 35493 Streptophyta 0.45 180968 0 P1 131221 Streptophytina 0.45 180968 2717 P2 3193 Embryophyta 0.45 178042 0 P3 58023 Tracheophyta 0.45 178042 0 P4 78536 Euphyllophyta 0.45 178042 0 P5 58024 Spermatophyta 0.45 178042 1727 C 3398 Magnoliopsida 0.44 176284 86709 C1 1437183 Mesangiospermae 0.18 73016 0 C2 71240 eudicotyledons 0.18 73016 0 C3 91827 Gunneridae 0.18 73016 28992 C4 1437201 Pentapetalae 0.09 35127 6499 C5 71275 rosids 0.06 25830 5963 C6 91835 fabids 0.04 17604 0 O 72025 Fabales 0.04 17604 0 F 3803 Fabaceae 0.04 17604 0 F1 3814 Papilionoideae 0.04 17604 792 F2 2231393 50 kb inversion clade 0.04 16209 509 F3 2231382 NPAAA clade 0.04 14907 29 F4 2233838 Hologalegina 0.04 14860 102 F5 2233839 IRL clade 0.04 14555 0 F6 163743 Fabeae 0.04 14555 0 G 3887 Pisum 0.04 14555 14555 S 3888 Pisum sativum 0.00 130 8 F6 163742 Trifolieae 0.00 69 0 G 3877 Medicago 0.00 69 69 S 3880 Medicago truncatula 0.00 53 0 G 3898 Trifolium 0.00 53 53 S 57577 Trifolium pratense 0.00 73 0 F6 163722 Cicereae 0.00 73 0 G 3826 Cicer 0.00 73 73 S 3827 Cicer arietinum 0.00 18 0 F5 2233857 robinioid clade 0.00 18 0 F6 163747 Loteae 0.00 18 0 G 3867 Lotus 0.00 18 18 S 34305 Lotus japonicus 0.00 793 0 F4 2233855 indigoferoid/millettioid clade 0.00 793 217 F5 163735 Phaseoleae 0.00 240 33 G 3913 Vigna 0.00 102 0 S 157791 Vigna radiata 0.00 102 102 S1 3916 Vigna radiata var. radiata 0.00 54 54 S 3917 Vigna unguiculata 0.00 51 51 S 3914 Vigna angularis 0.00 144 0 G 3846 Glycine 0.00 144 109 G1 1462606 Glycine subgen. Soja 0.00 22 22 S 3848 Glycine soja 0.00 13 13 S 3847 Glycine max 0.00 138 0 G 3820 Cajanus 0.00 138 138 S 3821 Cajanus cajan 0.00 54 0 G 3883 Phaseolus 0.00 54 54 S 3885 Phaseolus vulgaris 0.00 547 0 F3 2231387 dalbergioids sensu lato 0.00 547 0 F4 163725 Dalbergieae 0.00 547 0 F5 2231390 Pterocarpus clade 0.00 547 233 G 3817 Arachis 0.00 252 252 S 130453 Arachis duranensis 0.00 25 25 S 130454 Arachis ipaensis 0.00 21 21 S 217475 Arachis stenosperma 0.00 16 16 S 3818 Arachis hypogaea 0.00 56 0 F3 2231384 genistoids sensu lato 0.00 56 0 F4 2231385 core genistoids 0.00 56 0 F5 163729 Genisteae 0.00 56 0 G 3869 Lupinus 0.00 56 56 S 3871 Lupinus angustifolius 0.00 750 31 O 3646 Malpighiales 0.00 655 37 F 3977 Euphorbiaceae 0.00 516 14 F1 235631 Crotonoideae 0.00 454 0 F2 235882 Micrandreae 0.00 454 0 G 3980 Hevea 0.00 454 454 S 3981 Hevea brasiliensis 0.00 48 0 F2 235883 Manihoteae 0.00 48 0 G 3982 Manihot 0.00 48 48 S 3983 Manihot esculenta 0.00 102 0 F1 235629 Acalyphoideae 0.00 102 12 F2 235880 Acalypheae 0.00 57 0 G 3987 Ricinus 0.00 57 57 S 3988 Ricinus communis 0.00 33 0 G 3984 Mercurialis 0.00 33 33 S 3986 Mercurialis annua 0.00 64 0 F 3688 Salicaceae 0.00 64 0 F1 238069 Saliceae 0.00 64 0 G 3689 Populus 0.00 64 64 S 3694 Populus trichocarpa 0.00 561 66 O 3744 Rosales 0.00 404 32 F 3745 Rosaceae 0.00 291 37 F1 171637 Amygdaloideae 0.00 190 0 F2 721813 Maleae 0.00 190 47 G 3749 Malus 0.00 128 128 S 3750 Malus domestica 0.00 15 15 S 3752 Malus sylvestris 0.00 64 0 F2 721805 Amygdaleae 0.00 64 25 G 3754 Prunus 0.00 24 24 S 102107 Prunus mume 0.00 9 9 S 3755 Prunus dulcis 0.00 6 6 S 3760 Prunus persica 0.00 81 2 F1 171638 Rosoideae 0.00 55 0 F2 721789 Potentilleae 0.00 40 0 F3 1184124 Fragariinae 0.00 40 0 G 3746 Fragaria 0.00 40 0 S 57918 Fragaria vesca 0.00 40 40 S1 101020 Fragaria vesca subsp. vesca 0.00 15 0 F3 1184125 Potentilleae incertae sedis 0.00 15 0 G 23204 Potentilla 0.00 15 15 S 57926 Potentilla anserina 0.00 24 0 F2 1176516 Rosoideae incertae sedis 0.00 24 0 G 3764 Rosa 0.00 24 24 S 74649 Rosa chinensis 0.00 51 0 F 3481 Cannabaceae 0.00 51 0 G 3482 Cannabis 0.00 51 51 S 3483 Cannabis sativa 0.00 40 0 F 3608 Rhamnaceae 0.00 40 0 F1 325284 Paliureae 0.00 40 0 G 72171 Ziziphus 0.00 40 0 S 326968 Ziziphus jujuba 0.00 40 40 S1 714518 Ziziphus jujuba var. spinosa 0.00 526 62 O 3502 Fagales 0.00 300 17 F 16714 Juglandaceae 0.00 224 20 G 16718 Juglans 0.00 177 177 S 51240 Juglans regia 0.00 27 27 S 2249226 Juglans microcarpa x Juglans regia 0.00 59 0 G 13402 Carya 0.00 59 59 S 32201 Carya illinoinensis 0.00 164 0 F 3503 Fagaceae 0.00 164 76 G 3511 Quercus 0.00 47 47 S 38942 Quercus robur 0.00 41 41 S 97700 Quercus lobata 0.00 405 0 O 71239 Cucurbitales 0.00 405 45 F 3650 Cucurbitaceae 0.00 190 0 F1 1003878 Cucurbiteae 0.00 190 0 G 3660 Cucurbita 0.00 190 0 S 3663 Cucurbita pepo 0.00 190 190 S1 3664 Cucurbita pepo subsp. pepo 0.00 170 19 F1 1003877 Benincaseae 0.00 80 0 G 102210 Benincasa 0.00 80 80 S 102211 Benincasa hispida 0.00 71 6 G 3655 Cucumis 0.00 42 42 S 3656 Cucumis melo 0.00 23 23 S 3659 Cucumis sativus 0.00 21 0 O 233875 Celastrales 0.00 21 0 F 4305 Celastraceae 0.00 21 0 G 123484 Tripterygium 0.00 21 21 S 458696 Tripterygium wilfordii 0.01 2718 446 C6 91836 malvids 0.00 1404 0 O 3699 Brassicales 0.00 1404 54 F 3700 Brassicaceae 0.00 1044 15 F1 981071 Brassiceae 0.00 976 64 G 3705 Brassica 0.00 867 0 S 3712 Brassica oleracea 0.00 867 867 S1 109376 Brassica oleracea var. oleracea 0.00 35 35 S 3708 Brassica napus 0.00 10 10 S 3711 Brassica rapa 0.00 53 0 G 3725 Raphanus 0.00 53 53 S 3726 Raphanus sativus 0.00 306 7 F1 980083 Camelineae 0.00 292 0 G 71323 Camelina 0.00 292 292 S 90675 Camelina sativa 0.00 7 0 G 3701 Arabidopsis 0.00 7 7 S 3702 Arabidopsis thaliana 0.00 648 0 O 41938 Malvales 0.00 648 19 F 3629 Malvaceae 0.00 589 0 F1 214907 Malvoideae 0.00 589 201 G 3633 Gossypium 0.00 279 279 S 29730 Gossypium raimondii 0.00 79 79 S 3635 Gossypium hirsutum 0.00 30 30 S 29729 Gossypium arboreum 0.00 40 0 F1 214909 Byttnerioideae 0.00 40 0 G 3640 Theobroma 0.00 40 40 S 3641 Theobroma cacao 0.00 121 8 O 41944 Myrtales 0.00 94 0 F 3931 Myrtaceae 0.00 94 2 F1 1699513 Myrtoideae 0.00 71 0 F2 1699524 Eucalypteae 0.00 71 0 G 3932 Eucalyptus 0.00 71 71 S 71139 Eucalyptus grandis 0.00 21 0 F2 1699523 Myrteae 0.00 21 0 F3 1705102 Australasian group 0.00 21 0 G 178132 Rhodamnia 0.00 21 21 S 178133 Rhodamnia argentea 0.00 19 0 F 3928 Lythraceae 0.00 19 0 G 22662 Punica 0.00 19 19 S 22663 Punica granatum 0.00 99 3 O 41937 Sapindales 0.00 48 0 F 4011 Anacardiaceae 0.00 48 0 G 23461 Mangifera 0.00 48 48 S 29780 Mangifera indica 0.00 48 0 F 23513 Rutaceae 0.00 48 0 F1 1728959 Aurantioideae 0.00 48 0 G 2706 Citrus 0.00 48 48 S 2711 Citrus sinensis 0.00 80 0 C6 91834 rosids incertae sedis 0.00 80 0 O 403667 Vitales 0.00 80 0 F 3602 Vitaceae 0.00 80 0 F1 2304100 Viteae 0.00 80 32 G 3603 Vitis 0.00 27 27 S 29760 Vitis vinifera 0.00 21 21 S 96939 Vitis riparia 0.02 8392 3181 C5 71274 asterids 0.01 3513 1029 C6 91888 lamiids 0.00 1683 114 O 4069 Solanales 0.00 1471 198 F 4070 Solanaceae 0.00 1109 235 F1 424551 Solanoideae 0.00 506 0 F2 424574 Solaneae 0.00 506 105 G 4107 Solanum 0.00 249 58 G1 49274 Solanum subgen. Lycopersicon 0.00 99 99 S 28526 Solanum pennellii 0.00 92 92 S 4081 Solanum lycopersicum 0.00 83 83 S 45834 Solanum dulcamara 0.00 69 69 S 172797 Solanum stenotomum 0.00 368 0 F2 424564 Capsiceae 0.00 368 0 G 4071 Capsicum 0.00 368 368 S 4072 Capsicum annuum 0.00 164 0 F1 424554 Nicotianoideae 0.00 164 0 F2 424562 Nicotianeae 0.00 164 0 G 4085 Nicotiana 0.00 164 164 S 49451 Nicotiana attenuata 0.00 98 0 F 4118 Convolvulaceae 0.00 98 0 F1 267213 Ipomoeeae 0.00 98 0 G 4119 Ipomoea 0.00 98 98 S 35885 Ipomoea triloba 0.00 703 83 O 4143 Lamiales 0.00 422 0 F 4144 Oleaceae 0.00 422 0 F1 426106 Oleeae 0.00 422 0 G 4145 Olea 0.00 422 0 S 4146 Olea europaea 0.00 422 0 S1 158383 Olea europaea subsp. europaea 0.00 422 422 S2 158386 Olea europaea var. sylvestris 0.00 162 0 F 4136 Lamiaceae 0.00 162 0 F1 216706 Nepetoideae 0.00 162 0 F2 216718 Mentheae 0.00 162 0 F3 2836339 Salviinae 0.00 162 24 G 21880 Salvia 0.00 78 4 G1 2291027 Salvia incertae sedis 0.00 44 44 S 226208 Salvia miltiorrhiza 0.00 30 30 S 49212 Salvia hispanica 0.00 60 0 G1 2026555 Salvia subgen. Calosphace 0.00 60 0 G2 2026556 core Calosphace 0.00 60 60 S 180675 Salvia splendens 0.00 36 0 F 4180 Pedaliaceae 0.00 36 0 G 4181 Sesamum 0.00 36 36 S 4182 Sesamum indicum 0.00 98 0 O 4055 Gentianales 0.00 98 0 F 24966 Rubiaceae 0.00 98 0 F1 169618 Ixoroideae 0.00 98 0 F2 1968429 Gardenieae complex 0.00 98 0 F3 1968428 Bertiereae - Coffeeae clade 0.00 98 0 F4 169640 Coffeeae 0.00 98 47 G 13442 Coffea 0.00 30 30 S 49369 Coffea eugenioides 0.00 21 21 S 13443 Coffea arabica 0.00 1312 40 C6 91882 campanulids 0.00 756 0 O 4209 Asterales 0.00 756 223 F 4210 Asteraceae 0.00 245 21 F1 102804 Asteroideae 0.00 172 0 F2 911341 Heliantheae alliance 0.00 172 0 F3 102814 Heliantheae 0.00 172 0 G 4231 Helianthus 0.00 172 172 S 4232 Helianthus annuus 0.00 52 0 F2 102809 Astereae 0.00 52 0 F3 877976 North American clade 0.00 52 0 F4 2841728 Conyzinae 0.00 52 0 G 41574 Erigeron 0.00 52 52 S 72917 Erigeron canadensis 0.00 148 0 F1 219103 Carduoideae 0.00 148 0 F2 102818 Cardueae 0.00 148 0 F3 742010 Carduinae 0.00 148 0 G 4264 Cynara 0.00 148 0 S 4265 Cynara cardunculus 0.00 148 0 S1 309979 Cynara cardunculus subsp. cardunculus 0.00 148 148 S2 59895 Cynara cardunculus var. scolymus 0.00 140 0 F1 219120 Cichorioideae 0.00 140 0 F2 219121 Cichorieae 0.00 140 0 F3 745062 Lactucinae 0.00 140 0 G 4235 Lactuca 0.00 140 140 S 4236 Lactuca sativa 0.00 516 0 O 4036 Apiales 0.00 516 0 O1 364270 Apiineae 0.00 516 0 F 4037 Apiaceae 0.00 516 0 F1 241778 Apioideae 0.00 516 0 F2 241789 Scandiceae 0.00 516 0 F3 241799 Daucinae 0.00 516 0 G 4038 Daucus 0.00 516 0 G1 1873447 Daucus sect. Daucus 0.00 516 0 S 4039 Daucus carota 0.00 516 516 S1 79200 Daucus carota subsp. sativus 0.00 386 80 O 41945 Ericales 0.00 87 0 F 4345 Ericaceae 0.00 87 0 F1 217035 Ericoideae 0.00 87 0 F2 217046 Rhodoreae 0.00 87 0 G 4346 Rhododendron 0.00 87 87 S 182163 Rhododendron vialii 0.00 84 0 F 25692 Balsaminaceae 0.00 84 0 G 35939 Impatiens 0.00 84 84 S 253017 Impatiens glandulifera 0.00 73 0 F 3623 Actinidiaceae 0.00 73 0 G 3624 Actinidia 0.00 73 73 S 165200 Actinidia eriantha 0.00 62 0 F 19955 Ebenaceae 0.00 62 0 G 13492 Diospyros 0.00 62 62 S 55363 Diospyros lotus 0.00 378 18 O 3524 Caryophyllales 0.00 322 82 F 1804623 Chenopodiaceae 0.00 192 0 F1 1804621 Betoideae 0.00 192 0 G 3554 Beta 0.00 192 0 S 161934 Beta vulgaris 0.00 192 192 S1 3555 Beta vulgaris subsp. vulgaris 0.00 48 0 F1 1307796 Chenopodioideae 0.00 48 0 F2 1307775 Anserineae 0.00 48 0 G 3561 Spinacia 0.00 48 48 S 3562 Spinacia oleracea 0.00 38 0 F 3563 Amaranthaceae 0.00 38 0 G 3564 Amaranthus 0.00 38 38 S 29722 Amaranthus tricolor 0.00 127 0 O 41947 Santalales 0.00 127 0 F 1003242 Ximeniaceae 0.00 127 0 G 397391 Malania 0.00 127 127 S 397392 Malania oleifera 0.04 14589 0 C2 4447 Liliopsida 0.04 14589 868 C3 1437197 Petrosaviidae 0.03 13418 1467 C4 4734 commelinids 0.03 10394 146 O 38820 Poales 0.03 10093 6230 F 4479 Poaceae 0.01 3249 197 F1 359160 BOP clade 0.01 2945 180 F2 147368 Pooideae 0.01 2392 0 F3 1648038 Triticodae 0.01 2392 163 F4 147389 Triticeae 0.01 2096 429 F5 1648030 Triticinae 0.00 1550 857 G 4564 Triticum 0.00 413 413 S 85692 Triticum dicoccoides 0.00 232 232 S 4565 Triticum aestivum 0.00 48 48 S 4572 Triticum urartu 0.00 117 0 G 4480 Aegilops 0.00 117 0 S 37682 Aegilops tauschii 0.00 117 117 S1 200361 Aegilops tauschii subsp. strangulata 0.00 133 0 F5 1648017 Hordeinae 0.00 133 0 G 4512 Hordeum 0.00 133 0 S 4513 Hordeum vulgare 0.00 133 133 S1 112509 Hordeum vulgare subsp. vulgare 0.00 360 0 F3 1648037 Poodae 0.00 360 0 F4 147387 Poeae 0.00 360 0 F5 1652081 Poeae Chloroplast Group 2 (Poeae type) 0.00 360 0 F6 2948571 Loliodinae 0.00 360 0 F7 640630 Loliinae 0.00 360 75 G 4520 Lolium 0.00 225 225 S 4522 Lolium perenne 0.00 60 60 S 89674 Lolium rigidum 0.00 13 0 F3 2822797 Stipodae 0.00 13 0 F4 147385 Brachypodieae 0.00 13 0 G 15367 Brachypodium 0.00 13 13 S 15368 Brachypodium distachyon 0.00 107 0 F2 147367 Oryzoideae 0.00 107 0 F3 147380 Oryzeae 0.00 107 0 F4 1648021 Oryzinae 0.00 107 29 G 4527 Oryza 0.00 40 0 S 4530 Oryza sativa 0.00 40 40 S1 39947 Oryza sativa Japonica Group 0.00 24 24 S 4533 Oryza brachyantha 0.00 14 14 S 4538 Oryza glaberrima 0.00 614 0 F1 147370 PACMAD clade 0.00 614 28 F2 147369 Panicoideae 0.00 467 0 F3 1648036 Panicodae 0.00 467 12 F4 147428 Paniceae 0.00 397 0 F5 1293365 Panicinae 0.00 397 15 G 4539 Panicum 0.00 317 0 G1 2100772 Panicum sect. Panicum 0.00 317 317 S 206008 Panicum hallii 0.00 65 0 G1 2100771 Panicum sect. Hiantes 0.00 65 65 S 38727 Panicum virgatum 0.00 58 0 F5 1293361 Cenchrinae 0.00 58 29 G 4554 Setaria 0.00 20 20 S 4555 Setaria italica 0.00 9 9 S 4556 Setaria viridis 0.00 119 0 F3 1648033 Andropogonodae 0.00 119 8 F4 147429 Andropogoneae 0.00 76 0 F5 1648029 Tripsacinae 0.00 76 0 G 4575 Zea 0.00 76 76 S 4577 Zea mays 0.00 35 0 F5 1648028 Sorghinae 0.00 35 0 G 4557 Sorghum 0.00 35 35 S 4558 Sorghum bicolor 0.00 155 0 F 4613 Bromeliaceae 0.00 155 0 F1 1909378 Bromelioideae 0.00 155 0 G 4614 Ananas 0.00 155 155 S 4615 Ananas comosus 0.00 1370 0 O 40551 Arecales 0.00 1370 18 F 4710 Arecaceae 0.00 1326 0 F1 169697 Arecoideae 0.00 1326 0 F2 169705 Cocoseae 0.00 1326 0 F3 169729 Elaeidinae 0.00 1326 0 G 51952 Elaeis 0.00 1326 1326 S 51953 Elaeis guineensis 0.00 26 0 F1 169700 Coryphoideae 0.00 26 0 F2 169748 Phoeniceae 0.00 26 0 G 4719 Phoenix 0.00 26 26 S 42345 Phoenix dactylifera 0.00 187 5 O 4618 Zingiberales 0.00 131 0 F 4642 Zingiberaceae 0.00 131 0 G 4650 Zingiber 0.00 131 131 S 94328 Zingiber officinale 0.00 51 0 F 4637 Musaceae 0.00 51 0 G 4640 Musa 0.00 51 0 S 4641 Musa acuminata 0.00 51 51 S1 214687 Musa acuminata subsp. malaccensis 0.00 240 0 O 73496 Asparagales 0.00 240 0 F 40552 Asparagaceae 0.00 240 0 F1 703533 Asparagoideae 0.00 240 0 G 4685 Asparagus 0.00 240 240 S 4686 Asparagus officinalis 0.00 63 0 O 40548 Dioscoreales 0.00 63 0 F 4671 Dioscoreaceae 0.00 63 0 G 4672 Dioscorea 0.00 63 0 S 29710 Dioscorea cayenensis 0.00 63 63 S1 55577 Dioscorea cayenensis subsp. rotundata 0.00 724 0 O 232378 Proteales 0.00 724 14 F 4328 Proteaceae 0.00 404 0 G 4329 Macadamia 0.00 404 404 S 60698 Macadamia integrifolia 0.00 306 0 G 54954 Telopea 0.00 306 306 S 54955 Telopea speciosissima 0.00 643 0 C2 232347 Magnoliidae 0.00 643 0 O 3400 Magnoliales 0.00 643 0 F 3401 Magnoliaceae 0.00 643 0 G 3402 Magnolia 0.00 643 643 S 86752 Magnolia sinica 0.00 603 0 O 41768 Ranunculales 0.00 603 0 F 3465 Papaveraceae 0.00 603 0 F1 1462614 Papaveroideae 0.00 603 0 G 3468 Papaver 0.00 603 603 S 3469 Papaver somniferum 0.00 31 0 O 261007 Nymphaeales 0.00 31 0 F 4410 Nymphaeaceae 0.00 31 0 G 4418 Nymphaea 0.00 31 31 S 210225 Nymphaea colorata 0.00 209 0 P3 3208 Bryophyta 0.00 209 0 P4 404260 Bryophytina 0.00 209 0 C 3214 Bryopsida 0.00 209 0 C1 114656 Funariidae 0.00 209 0 O 3215 Funariales 0.00 209 0 F 3216 Funariaceae 0.00 209 0 G 37414 Physcomitrium 0.00 209 209 S 3218 Physcomitrium patens 0.00 170 5 P 3041 Chlorophyta 0.00 102 0 C 1035538 Mamiellophyceae 0.00 102 43 O 13792 Mamiellales 0.00 47 0 F 41873 Mamiellaceae 0.00 47 0 G 38832 Micromonas 0.00 47 47 S 296587 Micromonas commoda 0.00 12 0 F 1525212 Bathycoccaceae 0.00 8 0 G 41874 Bathycoccus 0.00 8 8 S 41875 Bathycoccus prasinos 0.00 4 0 G 70447 Ostreococcus 0.00 3 3 S 70448 Ostreococcus tauri 0.00 1 0 G1 2268852 unclassified Ostreococcus 0.00 1 0 S 242159 Ostreococcus sp. 'lucimarinus' 0.00 1 1 S1 436017 Ostreococcus lucimarinus CCE9901 0.00 63 0 P1 2692248 core chlorophytes 0.00 63 0 C 3166 Chlorophyceae 0.00 63 0 C1 2812636 CS clade 0.00 63 0 O 3042 Chlamydomonadales 0.00 63 0 F 3051 Chlamydomonadaceae 0.00 63 0 G 3052 Chlamydomonas 0.00 63 63 S 3055 Chlamydomonas reinhardtii 0.00 1 0 P 2763 Rhodophyta 0.00 1 0 C 2797 Bangiophyceae 0.00 1 0 O 265318 Cyanidiales 0.00 1 0 F 265316 Cyanidiaceae 0.00 1 0 G 45156 Cyanidioschyzon 0.00 1 0 S 45157 Cyanidioschyzon merolae 0.00 1 1 S1 280699 Cyanidioschyzon merolae strain 10D